PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj4g3v1140670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family NAC
Protein Properties Length: 343aa    MW: 38620.6 Da    PI: 5.2499
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj4g3v1140670.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.91.4e-5161371128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv +yLk+kveg ++el evi+ +d yk++Pw+Lp k  +  ++ ew+fF++rd+ky++g+r+nratk+gyWkatgkd++v
  Lj4g3v1140670.1   6 LPPGFRFHPTDEELVGYYLKRKVEGLEIEL-EVIPVIDFYKFDPWELPeKsFLPRRDLEWFFFCPRDRKYPNGSRTNRATKAGYWKATGKDRKV 98 
                      79****************************.99***************5333444667************************************ PP

              NAM  93 lsk...kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +s+    ++++g +ktLvfy grap g +t+Wvmheyrl
  Lj4g3v1140670.1  99 ISQcddASTVTGYRKTLVFYLGRAPLGDRTHWVMHEYRL 137
                      **98877778***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.97E-594161IPR003441NAC domain
PROSITE profilePS5100557.6766161IPR003441NAC domain
PfamPF023651.4E-297137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEGAPLPPGF RFHPTDEELV GYYLKRKVEG LEIELEVIPV IDFYKFDPWE LPEKSFLPRR  60
DLEWFFFCPR DRKYPNGSRT NRATKAGYWK ATGKDRKVIS QCDDASTVTG YRKTLVFYLG  120
RAPLGDRTHW VMHEYRLCDD DPGQASPCFK GGFALCRVTK KNEKTSYSHG EQKGKEGASS  180
SINGSDTSLR FSGDGSSQAS HLNNESHYSS PVTSPYNVAP VPDTNQAFTE TNPSNFWISS  240
NMILDSSKDY AQVQDVVSEY SPRYGLPSAV TPRQSSEQEQ TEISSSLSNS NFNAEIEFSD  300
NLSQIGCMSP CTSHGNFMDF YGNFDAPYEG YHQINSVPHP DPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-49616217166NO APICAL MERISTEM PROTEIN
1ut4_B3e-49616217166NO APICAL MERISTEM PROTEIN
1ut7_A3e-49616217166NO APICAL MERISTEM PROTEIN
1ut7_B3e-49616217166NO APICAL MERISTEM PROTEIN
4dul_A3e-49616217166NAC domain-containing protein 19
4dul_B3e-49616217166NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150343e-65AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003524716.10.0PREDICTED: NAC domain-containing protein 86-like
SwissprotA4VCM03e-67NAC45_ARATH; NAC domain-containing protein 45
TrEMBLA0A151SKE40.0A0A151SKE4_CAJCA; NAC domain-containing protein 78
STRINGGLYMA05G23840.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-104NAC domain containing protein 71